- Basic information
- CohesinDB ID: CDBP00413882
- Locus: chr21-17114019-17114504
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Data sourse: GSE105028, GSE97394, GSE138405
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Cell type: HUES64, Hela-Kyoto, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: Rad21,SA2
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CTCF binding site: non-CTCF
CTCF motif: True
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
31% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 83%,
"7_Enh": 8%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, NANOG, CEBPA, POU5F1, EBF1, SOX2, NME2, SMAD3, FOXA1, HLF, HOXB13, ERG, RAD21, CHD7, GABPA, TLE3, CREB1, PIAS1, EZH2, CTCF, T, NIPBL, BAF155, SPI1, HNF4A, AR, ARID1A, ASH2L, FOXP1
- Target gene symbol (double-evidenced CRMs): CXADR
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 5
- Related genes and loops