Deatailed information for cohesin site CDBP00413915
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBP00413915
- Locus: chr21-17352342-17352564
- Data sourse: GSE206145-NatGen2015, GSE67783
- Cell type: Fibroblast, HSPC
- DNA Sequence of binding site: UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,SA2
- CTCF binding site: non-CTCF CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
- Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True
- Compartment: 46% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 91%,
"9_Het": 5%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2). - Co-bound Transcriptional factors: MED1, EGR2, ASCL1, GATA2, MYC, EBF1, SMARCA4, ZFX, NOTCH3, BRD4, KLF9, GATA3, MYOD1, ERG3, MAX, GATA1, ZFHX2
- Target gene symbol (double-evidenced CRMs): C21orf91,TMPRSS15
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene: ENSG00000154642, ENSG00000154646,
- Related loop: chr21:16925000-16950000~~chr21:17350000-17375000, chr21:17100000-17125000~~chr21:17325000-17350000, chr21:17100000-17125000~~chr21:17350000-17375000, chr21:17125000-17150000~~chr21:17325000-17350000, chr21:17125000-17150000~~chr21:17350000-17375000, chr21:17350000-17375000~~chr21:17775000-17800000, chr21:17350000-17375000~~chr21:17900000-17925000, chr21:17350000-17375000~~chr21:18250000-18275000, chr21:17351425-17352731~~chr21:17369915-17372377,
Tools:
- Assay
