- Basic information
- CohesinDB ID: CDBP00413916
- Locus: chr21-17352941-17353720
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Data sourse: ENCSR000BLD, GSE116344, GSE86191, GSE83726
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Cell type: H1-hESC, RH4, HCT-116
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: Rad21
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CTCF binding site: CTCF
CTCF motif: True
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
46% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 87%,
"9_Het": 6%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: MED1, EGR2, ASCL1, GATA2, MYC, EBF1, SMARCA4, ZFX, NOTCH3, BRD4, KLF9, GATA3, MYOD1, ERG3, MAX, GATA1, ZFHX2
- Target gene symbol (double-evidenced CRMs): C21orf91,TMPRSS15
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 3
- Related genes and loops
- Related gene:
ENSG00000154642,
ENSG00000154646,
- Related loop:
chr21:16925000-16950000~~chr21:17350000-17375000,
chr21:17100000-17125000~~chr21:17325000-17350000,
chr21:17100000-17125000~~chr21:17350000-17375000,
chr21:17125000-17150000~~chr21:17325000-17350000,
chr21:17125000-17150000~~chr21:17350000-17375000,
chr21:17350000-17375000~~chr21:17775000-17800000,
chr21:17350000-17375000~~chr21:17900000-17925000,
chr21:17350000-17375000~~chr21:18250000-18275000,
chr21:17351425-17352731~~chr21:17369915-17372377,