- Basic information
- CohesinDB ID: CDBP00413919
- Locus: chr21-17368762-17369199
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Data sourse: ENCSR054FKH, ENCSR338DUC, GSE72082, ENCSR167MTG
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Cell type: Hep-G2
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: SA1,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
46% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 87%,
"14_ReprPCWk": 8%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NFIA, HMG20A, FOXA1, HLF, RXRB, KDM3A, TFAP4, THRB, MXD4, PAX5, ZNF736, TEAD1, KLF6, KLF10, RCOR2, CTCF, TCF12, EP300, SOX5, DMAP1, FOXA3, ZNF175, GATAD2A, MLX, RBPJ, POU5F1, TOP2A, GATAD1, SAP130, ARID3A, HNF4G, SMARCC2, ONECUT1, HOMEZ, RAD21, GRHL3, RXRA, PROX1, GABPA, ZNF614, XRCC5, MIER3, NR2F6, CEBPB, CREB1, TBL1XR1, ZNF652, MIXL1, TFE3, HBP1, HDAC2, SSRP1, ZNF644, DRAP1, ZGPAT, NFIL3, ETV5, THAP11, BCL6, CEBPA, SOX13, ZNF534, ZFX, ERG3, TBX3, SP5, RARA, ZNF384, GATA4, ARNT, SMAD4, FOS, HMGXB4, TEAD3, MBD1, SP1, HNF4A, IKZF5, ASH2L, FOXP1, SKI, PPARG, FOXA2, CREM, MIER2, TCF7, ZNF580, KDM1A, ZNF143, CEBPG, NR2F2, ELF3, PHF5A, KAT8, NFKBIZ, AR, ARID4B, ZBTB26, JUND, ZNF24, AHR, FOSL2
- Target gene symbol (double-evidenced CRMs): C21orf91,TMPRSS15
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 3
- Related genes and loops