- Basic information
- CohesinDB ID: CDBP00413982
- Locus: chr21-17536516-17536792
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Data sourse: GSE101921, ENCSR230ZWH
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Cell type: Liver, HCAEC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Rad21,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
60% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 39%,
"5_TxWk": 23%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, PGR, CHD8, ZFX, XBP1, ERF, STAT1, FOXA1, HOXB13, ERG, RELA, ETS1, MYC, GR, NFIB, GRHL3, HIF1A, ARNT, GABPA, ZNF189, TAL1, XRCC5, GATA1, HDAC3, TEAD3, TRIM28, KLF6, SNAI2, ETV1, EZH2, KLF10, ESR1, TP53, FEZF1, BRD2, RBM22, SPI1, BAF155, AR, IRF1, GATA2, FLI1, FOXP1, SMC3
- Target gene symbol (double-evidenced CRMs): CXADR
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops