- Basic information
- CohesinDB ID: CDBP00413990
- Locus: chr21-17552603-17553088
-
Data sourse: GSE206145, GSE206145-NatGen2015
-
Cell type: Fibroblast, HEK293T
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,SA2
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
60% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 45%,
"5_TxWk": 36%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: ZNF394, GLIS1, ZSCAN5C, ZBTB17, ZBTB48, WT1, FOXA1, ZNF134, CBX8, HIC1, ZNF35, ZNF384, ZNF341, MYC, ZSCAN30, OSR2, ZBTB44, OTX2, ZEB2, ZNF189, STAT3, MZF1, ZNF10, FOS, ZNF639, TLE3, TRIM28, TCF7L2, PIAS1, KLF10, ZNF213, KLF8, FEZF1, RBM22, BCL11A, AR, OVOL3, PRDM4, ZBTB42, SCRT1, PHIP, PRDM6, ZSCAN23, ZNF34
- Target gene symbol (double-evidenced CRMs): CXADR
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 10
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000154639,
- Related loop:
chr21:16925000-16950000~~chr21:17525000-17550000,
chr21:16925000-16950000~~chr21:17550000-17575000,
chr21:17050000-17075000~~chr21:17550000-17575000,
chr21:17100000-17125000~~chr21:17550000-17575000,
chr21:17375000-17400000~~chr21:17550000-17575000,
chr21:17385933-17388190~~chr21:17554000-17555508,
chr21:17385938-17388768~~chr21:17553974-17555843,
chr21:17385997-17387993~~chr21:17553561-17555852,
chr21:17386011-17388740~~chr21:17553679-17555816,
chr21:17386026-17387946~~chr21:17553932-17555551,
chr21:17386036-17388915~~chr21:17553843-17555843,
chr21:17386038-17389021~~chr21:17553442-17555850,
chr21:17386054-17389016~~chr21:17553561-17555841,
chr21:17386069-17388018~~chr21:17553849-17555556,
chr21:17386074-17388534~~chr21:17553871-17555826,
chr21:17386077-17388636~~chr21:17553840-17555851,
chr21:17386098-17389064~~chr21:17553871-17555565,
chr21:17386111-17388007~~chr21:17553874-17555626,
chr21:17386118-17388987~~chr21:17553707-17555628,
chr21:17386123-17388073~~chr21:17554074-17555851,
chr21:17386143-17388031~~chr21:17553907-17555596,
chr21:17400000-17425000~~chr21:17550000-17575000,
chr21:17425000-17450000~~chr21:17550000-17575000,
chr21:17550000-17575000~~chr21:17650000-17675000,