- Basic information
- CohesinDB ID: CDBP00413991
- Locus: chr21-17553654-17556173
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Data sourse: ENCSR230ZWH, ENCSR000BSB, GSE131606, ENCSR330ELC, ENCSR000BUC, ENCSR000DYE, ENCSR917QNE, GSE93080, GSE86191, GSE51234, GSE101921, ENCSR806UKK, GSE120943, ENCSR198ZYJ, GSE112028, GSE130135, ENCSR199XBQ, GSE94872, ENCSR895JMI, ENCSR000EEG, ENCSR338DUC, ENCSR247LSH, GSE105004, ENCSR676MJK, ENCSR054FKH, ENCSR748MVX, ENCSR000ECS, ENCSR000BLD, GSE104888, GSE126634, GSE103477, GSE108869, GSE143937, GSE138405, GSE135093, GSE106870, ENCSR193NSH, GSE206145, GSE85526, ENCSR000ECE, ENCSR620NWG, ENCSR767DFK, ENCSR984DZW, GSE55407, ENCSR000BTQ, GSE129526, ENCSR537EFT, ENCSR760NPX, ENCSR000BLY, ENCSR150EFU, GSE121355, GSE111537, GSE25021, ENCSR000EAC, GSE76893, GSE145327, ENCSR000BMY, ENCSR000EHX, ENCSR635OSG, GSE97394, ENCSR217ELF, GSE110061, ENCSR000HPG, GSE111913, ENCSR335RKQ, ENCSR000EDE, GSE50893, ENCSR481YWD, GSE73207, GSE206145-GSE177045, GSE72082, ENCSR501LQA, ENCSR404BPV, GSE105028, ENCSR000EDW, ENCSR000EFJ, ENCSR000BTU, ENCSR000DZP, GSE152721, GSE206145-NatGen2015, GSE138105, ENCSR703TNG, GSE116344, GSE98367, ENCSR768DOX, ENCSR879KXD, ENCSR000BLS, ENCSR000EHW, ENCSR981FDC, ENCSR807WAC, ENCSR495WGO, ENCSR167MTG, ENCSR853VWZ, ENCSR956LGB, ENCSR944ZCT, GSE68388, GSE126990
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Cell type: MDM, RH4, GM10847, GM2610, SLK, CVB-hiPSC, GM19240, Liver, GP5d, HuCC-T1, H9-hESC, RPE, GM2630, HMEC, Fibroblast, HEKn, THP-1, Ishikawa, GM12890, HeLa-S3, GM2255, IMR-90, K-562, GM18486, DKO, GM18526, H1-hESC, SNYDER, Monocytes, GM18505, TF-1, GM12878, GM12891, GM2588, SK-N-SH, GM19239, HeLa-Tet-On, GM19193, RT-112, HAP1, GM19099, HUES64, Macrophage, GM12892, MCF-7, Hela-Kyoto, HCT-116, MCF-10A, HEK293T, Hep-G2, Neurons-H1, A-549, HUVEC, HCAEC, GM19238, HeLa, OCI-AML-3, GM18951
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 59% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.344
- Subunit: NIPBL,SA1,Rad21,SMC1,SMC3ac,SA2,SMC3
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CTCF binding site: CTCF
CTCF motif: True
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
60% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"5_TxWk": 34%,
"15_Quies": 33%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, NME2, FOXA1, PBX2, RXRB, KDM3A, ZBTB44, ZNF189, ZNF467, ZNF629, TEAD1, TRIM28, KLF6, ESR1, OCA2, PITX3, CTCF, JUN, EP300, GATA6, PAX8, TRIM24, DEK, SMC1, TEAD4, FOXA3, GATAD2A, PDX1, POU2F2, CHD8, BRD3, ZBTB17, ZBTB48, STAT1, SRF, SAP130, ARID3A, HIC1, HNF4G, MYC, HOMEZ, RAD21, GRHL3, RXRA, NKX2-1, XRCC5, ZNF614, RCOR1, NFE2, CEBPB, CREB1, EZH2, KLF8, EBF3, SPI1, MIXL1, GATA2, DRAP1, NFIL3, RUNX1, THAP11, BCL6, SMC1A, CEBPA, NKX2-2, SOX13, ZFX, SMAD3, ZFP37, PRDM10, ZBTB2, ZSCAN30, GATA4, OSR2, ZNF48, ATF2, PBX3, FOS, CDK8, TEAD3, CEBPD, MYB, RBM22, SP1, BCL11A, HNF4A, REST, ZHX1, ATF7, ASH2L, PHIP, SMC3, ELL2, STAG2, STAG1, PPARG, FOXA2, CHD2, MEIS1, GTF2B, MEF2C, CDK9, HOXB13, KDM1A, RELA, BRG1, ISL1, HIF1A, OTX2, GATA3, TAL1, MAX, SPIB, GATA1, AGO2, HAND2, CEBPG, NCOA3, KDM5B, TP53, PKNOX1, ZNF334, PHOX2B, BRD2, KAT8, ARID4B, AR, ZNF324, EGLN2, ZBTB26, BRD4, JUND, TBX2
- Target gene symbol (double-evidenced CRMs): CXADR
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 40
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000154639,
- Related loop:
chr21:16925000-16950000~~chr21:17525000-17550000,
chr21:16925000-16950000~~chr21:17550000-17575000,
chr21:17050000-17075000~~chr21:17550000-17575000,
chr21:17100000-17125000~~chr21:17550000-17575000,
chr21:17375000-17400000~~chr21:17550000-17575000,
chr21:17385933-17388190~~chr21:17554000-17555508,
chr21:17385938-17388768~~chr21:17553974-17555843,
chr21:17385997-17387993~~chr21:17553561-17555852,
chr21:17386011-17388740~~chr21:17553679-17555816,
chr21:17386026-17387946~~chr21:17553932-17555551,
chr21:17386036-17388915~~chr21:17553843-17555843,
chr21:17386038-17389021~~chr21:17553442-17555850,
chr21:17386054-17389016~~chr21:17553561-17555841,
chr21:17386069-17388018~~chr21:17553849-17555556,
chr21:17386074-17388534~~chr21:17553871-17555826,
chr21:17386077-17388636~~chr21:17553840-17555851,
chr21:17386098-17389064~~chr21:17553871-17555565,
chr21:17386111-17388007~~chr21:17553874-17555626,
chr21:17386118-17388987~~chr21:17553707-17555628,
chr21:17386123-17388073~~chr21:17554074-17555851,
chr21:17386143-17388031~~chr21:17553907-17555596,
chr21:17400000-17425000~~chr21:17550000-17575000,
chr21:17425000-17450000~~chr21:17550000-17575000,
chr21:17550000-17575000~~chr21:17650000-17675000,