- Basic information
- CohesinDB ID: CDBP00413992
- Locus: chr21-17560450-17560648
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Data sourse: ENCSR230ZWH
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Cell type: Liver
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
60% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 47%,
"5_TxWk": 23%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: CHD8, FOXA2, POU5F1, LDB1, TOP2A, ZFX, POU4F2, GTF2B, DUX4, STAT1, FOXA1, ZNF770, SUZ12, DDX5, HOXB13, ERG, TFAP4, RELA, ZNF384, EZH1, MYC, GATA4, GRHL3, ATF2, TAL1, SATB1, NKX3-1, GATA1, AGO2, CDK8, MITF, ARNTL, TLE3, NCOA3, ELF1, TRIM28, TEAD3, CREB1, SNAI2, PIAS1, LMO2, PKNOX1, HNF1B, ELF3, RBM22, SPI1, BAF155, BCL11A, AR, PAX8, GATA2, ZBTB42, ZBTB26, BRD4, RBPJ
- Target gene symbol (double-evidenced CRMs): CXADR
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000154639,
- Related loop:
chr21:16925000-16950000~~chr21:17550000-17575000,
chr21:17050000-17075000~~chr21:17550000-17575000,
chr21:17100000-17125000~~chr21:17550000-17575000,
chr21:17375000-17400000~~chr21:17550000-17575000,
chr21:17385933-17388190~~chr21:17554000-17555508,
chr21:17385938-17388768~~chr21:17553974-17555843,
chr21:17385997-17387993~~chr21:17553561-17555852,
chr21:17386011-17388740~~chr21:17553679-17555816,
chr21:17386026-17387946~~chr21:17553932-17555551,
chr21:17386036-17388915~~chr21:17553843-17555843,
chr21:17386038-17389021~~chr21:17553442-17555850,
chr21:17386054-17389016~~chr21:17553561-17555841,
chr21:17386069-17388018~~chr21:17553849-17555556,
chr21:17386074-17388534~~chr21:17553871-17555826,
chr21:17386077-17388636~~chr21:17553840-17555851,
chr21:17386098-17389064~~chr21:17553871-17555565,
chr21:17386111-17388007~~chr21:17553874-17555626,
chr21:17386118-17388987~~chr21:17553707-17555628,
chr21:17386123-17388073~~chr21:17554074-17555851,
chr21:17386143-17388031~~chr21:17553907-17555596,
chr21:17400000-17425000~~chr21:17550000-17575000,
chr21:17425000-17450000~~chr21:17550000-17575000,
chr21:17550000-17575000~~chr21:17650000-17675000,