- Basic information
- CohesinDB ID: CDBP00414045
- Locus: chr21-17788766-17789298
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Data sourse: GSE206145, GSE120943
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Cell type: Monocytes, B-cell
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Rad21,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
47% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"5_TxWk": 65%,
"7_Enh": 13%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: CBX5, SOX2, NME2, FOXA1, LYL1, NFIC, RUNX3, CBFB, MAF, JMJD1C, BCLAF1, ZNF217, LMO2, BAF155, MNT, DPF2, RAD51, TEAD4, RUNX1T1, TOP2A, MTA2, ZBTB48, NBN, ARID3A, ERG, NFKB2, MYC, RAD21, GABPA, NKX3-1, IKZF1, CEBPB, STAT5B, KMT2A, CREB1, SPI1, IRF1, GATA2, RELB, RUNX1, SMC1A, BCL6, CEBPA, TRIM22, MEF2A, NOTCH1, ATF2, ETV6, FOXM1, SUPT5H, CDK8, MED1, PML, MYB, PIAS1, SMAD1, STAT5A, NIPBL, BCL11A, SP1, ATF7, POU2F3, ASH2L, TCF3, FOXP1, MLLT1, NFATC3, SKI, MEF2B, MTA3, CREM, EBF1, NFATC1, E2F8, MEF2C, TCF7, CDK9, RELA, TARDBP, JUNB, GATA3, BATF, TAL1, GATA1, AGO2, TCF7L2, TP53, NFKB1, PHOX2B, TBX21, AR, ZBTB40, IKZF2, BRD4, ZNF24
- Target gene symbol (double-evidenced CRMs): C21orf91,USP25
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 15
- Number of somatic mutations (non-coding): 15
- Related genes and loops
- Related gene:
ENSG00000155313,
ENSG00000154642,
- Related loop:
chr21:14075000-14100000~~chr21:17775000-17800000,
chr21:14375000-14400000~~chr21:17775000-17800000,
chr21:15025000-15050000~~chr21:17775000-17800000,
chr21:15725000-15750000~~chr21:17775000-17800000,
chr21:17350000-17375000~~chr21:17775000-17800000,
chr21:17375000-17400000~~chr21:17775000-17800000,
chr21:17425000-17450000~~chr21:17775000-17800000,
chr21:17650000-17675000~~chr21:17775000-17800000,
chr21:17675000-17700000~~chr21:17775000-17800000,
chr21:17775000-17800000~~chr21:17900000-17925000,
chr21:17775000-17800000~~chr21:18100000-18125000,
chr21:17775000-17800000~~chr21:18875000-18900000,
chr21:17775000-17800000~~chr21:23825000-23850000,
chr21:17775000-17800000~~chr21:25175000-25200000,
chr21:17775000-17800000~~chr21:25450000-25475000,
chr21:17775000-17800000~~chr21:25725000-25750000,
chr21:17775000-17800000~~chr21:29000000-29025000,
chr21:17775000-17800000~~chr21:38225000-38250000,