- Basic information
- CohesinDB ID: CDBP00414207
- Locus: chr21-18877363-18878254
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Data sourse: GSE67783, GSE83726
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Cell type: RH4, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
30% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 49%,
"9_Het": 40%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: CHD8, ZSCAN5D, MYCN, ZFX, XBP1, ZBTB48, WT1, FOXA1, MEF2C, ERG, RELA, RAD21, SP140, MAX, SPIB, CDK8, TRIM28, MYB, MYOD1, CTCF, SPI1, AR, NOTCH3, FOXP1, E2F1, MAZ, SMC3, STAG1
- Target gene symbol (double-evidenced CRMs): C21orf91
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 12
- Related genes and loops