- Basic information
- CohesinDB ID: CDBP00415047
- Locus: chr21-23975217-23975960
-
Data sourse: GSE62063, GSE67783
-
Cell type: HSPC, Ramos
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: NIPBL,SA1
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
29% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 86%,
"9_Het": 5%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): MRPL39
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 16
- Related genes and loops
- Related gene:
ENSG00000154719,
- Related loop:
chr21:21000000-21025000~~chr21:23950000-23975000,
chr21:22775000-22800000~~chr21:23950000-23975000,
chr21:23125000-23150000~~chr21:23950000-23975000,
chr21:23400000-23425000~~chr21:23950000-23975000,
chr21:23725000-23750000~~chr21:23950000-23975000,
chr21:23850000-23875000~~chr21:23950000-23975000,
chr21:23853200-23855526~~chr21:23967713-23970278,
chr21:23975000-24000000~~chr21:24075000-24100000,
chr21:23975000-24000000~~chr21:25575000-25600000,