- Basic information
- CohesinDB ID: CDBP00415048
- Locus: chr21-23977792-23978602
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Data sourse: GSE111537, GSE73207, GSE138105
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Cell type: SLK, TF-1, OCI-AML-3
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SMC3,Rad21,SA2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
29% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 77%,
"9_Het": 10%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, SKI, FOXO1, NANOG, PGR, SMC1A, FOXA2, CEBPA, RUNX1T1, SOX2, MAFF, STAT1, FOXA1, MEF2C, SUZ12, CDK9, HOXB13, SMARCC1, HNF4G, ERG, RELA, LYL1, JUNB, MYC, RUNX2, BRG1, RAD21, PBX4, ARNT, TCF4, NKX2-1, GABPA, MECOM, STAT3, TAL1, NKX3-1, CHD1, CDK8, NFE2, VDR, TLE3, CEBPB, JMJD1C, ELF1, SMAD1, MYB, CREB1, PIAS1, TCF7L2, KMT2A, ETV1, ESR1, MLL, LMO2, KDM5B, MED, ZNF334, EVI1, ELF3, MAFK, BAF155, SPI1, BCL11A, EHF, AR, TRIM28, GATA2, ARID1A, TRIM24, EGR1, FLI1, BRD4, TCF3, TEAD4, KMT2B, MLLT1, ZNF316
- Target gene symbol (double-evidenced CRMs): MRPL39
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 12
- Related genes and loops