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Basic information

CohesinDB ID: CDBP00415161

Locus: chr21-25026039-25026539

Data sourse: GSE206145, GSE206145-NatGen2015, GSE67783

Cell type: RPE, Fibroblast, HSPC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.967

Subunit: NIPBL,SA1,Rad21,SA2

CTCF binding site: CTCF CTCF motif: False

Genomic location: TSS,TES

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 31% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 78%, "9_Het": 22%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: RUNX1, ZNF283, POU2F2, SMC1A, CHD8, ZSCAN5D, CEBPA, BCL6, ZFX, TEAD4, XBP1, WT1, ZBTB48, MAFF, FOXA1, SRF, RELA, ZNF384, RAD21, SP140, ARNT, GRHL3, ATF4, ATF2, MECOM, CDK8, MITF, VDR, CEBPB, SRSF3, JMJD1C, TRIM28, MYB, EZH2, ESR1, OCA2, MLL, C11orf30, SETDB1, USF2, ZNF22, CTCF, JUN, MAFK, SPI1, AR, GATA2, TRIM24, HSF1, NOTCH3, SCRT1, BRD4, CLOCK, MAZ, AATF, SMC3, KMT2B, STAG1, ZNF316

Target gene symbol (double-evidenced CRMs): ADAMTS1

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 5

Related genes and loops

Related gene: ENSG00000154734,

eachgene

Deatailed information for cohesin site CDBP00415161