- Basic information
- CohesinDB ID: CDBP00415172
- Locus: chr21-25103797-25104160
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Data sourse: ENCSR000BLY
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Cell type: SK-N-SH
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
31% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 87%,
"9_Het": 9%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, MAFG, POU5F1, DUX4, MAFF, HOXC5, NFIC, RAD21, LHX2, RXRA, OTX2, GATA3, STAT3, FOXM1, PBX3, FOS, C11orf30, TCF12, MAFK, EP300, BRD4, JUND, TEAD4, ZNF316, FOSL2
- Target gene symbol (double-evidenced CRMs): JAM2,ATP5PF
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 4
- Related genes and loops