- Basic information
- CohesinDB ID: CDBP00415173
- Locus: chr21-25107468-25108444
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Data sourse: GSE206145-NatGen2015, ENCSR000BLY, GSE73207
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Cell type: TF-1, Fibroblast, SK-N-SH
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: Mau2,SMC3,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
31% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 80%,
"9_Het": 12%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, FOSL1, POU2F2, CEBPA, POU5F1, ZNF660, ATF2, SIN3A, NME2, GTF2B, SMAD3, FOXA1, ZBTB33, CDK9, HOXC5, ZBTB21, ERG, MEF2A, PAX6, JUNB, ETS1, MYC, RUNX2, NFIC, SMARCA4, CHD7, PRDM1, PBX4, LHX2, RAD21, RXRA, BACH1, GATA3, ISL1, GABPA, DAXX, STAT3, PBX3, FOXM1, MAX, FOS, CDK8, NFE2, HAND2, MED1, BACH2, NR3C1, CEBPB, ELF1, ETV1, NFE2L2, EZH2, SETDB1, JUN, TCF12, ZHX2, BCL11A, EP300, MAFK, USF1, AR, REST, GATA2, TRIM24, ATF7, FLI1, BRD4, JUND, MRTFB, TEAD4, KMT2B, FOSL2
- Target gene symbol (double-evidenced CRMs): JAM2,ATP5PF
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 11
- Related genes and loops