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Basic information

CohesinDB ID: CDBP00415203

Locus: chr21-25324462-25325130

Data sourse: GSE126634, GSE152721

Cell type: HAP1

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.989

Subunit: Rad21

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 35% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "15_Quies": 91%, "5_TxWk": 3%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: FOXA2, MYCN, NKX2-2, SOX2, ISL1, TEAD4, BRD4, OTX2, FOXA1, PHOX2B, TBX2, HAND2

Target gene symbol (double-evidenced CRMs): APP,MRPL39

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000154719, ENSG00000142192,

eachgene

Deatailed information for cohesin site CDBP00415203