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Basic information

CohesinDB ID: CDBP00415205

Locus: chr21-25328669-25330433

Data sourse: GSE206145-NatGen2015, ENCSR000BLY, GSE165895

Cell type: Fibroblast, SK-N-SH, HFFc6

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 3% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.967

Subunit: NIPBL,SA1,Rad21,SMC1,SA2,Mau2

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 35% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "15_Quies": 72%, "7_Enh": 15%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: AR, NR3C1, NEUROD1, TEAD1, DAXX, BRD4, OTX2, NKX2-1, RELB, STAT3, HOXB13

Target gene symbol (double-evidenced CRMs): APP,MRPL39

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000154719, ENSG00000142192,

eachgene

Deatailed information for cohesin site CDBP00415205