- Basic information
- CohesinDB ID: CDBP00415233
- Locus: chr21-25463688-25465068
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Data sourse: GSE38395, ENCSR000EAC, ENCSR000DZP, GSE206145, ENCSR000BMY, GSE50893
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Cell type: RPE, GM12892, GM2630, GM2610, GM12878, GM12891, GM2588, GM12890, hLCL, B-cell
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 3% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.889
- Subunit: NIPBL,SA1,Rad21,Mau2,SMC3
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
35% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 89%,
"7_Enh": 5%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, CBX5, XBP1, FOXA1, HDGF, TSC22D4, NFIC, RUNX3, CBFB, PAX5, MAF, BCLAF1, SMAD5, USF2, JUN, CTCF, TCF12, EP300, PAX8, DPF2, IRF4, RAD51, RBPJ, EED, POU2F2, MTA2, DUX4, NBN, ARID3A, TBP, MYC, GRHL3, RXRA, BATF3, STAT3, UBN1, IKZF1, CD74, CEBPB, STAT5B, CREB1, SPI1, ZSCAN29, FLI1, DRAP1, RELB, NFYB, SMC1A, BCL6, TRIM22, ZNF18, MEF2A, ZBTB2, ZNF384, ATF2, PRDM9, FOXM1, PBX3, ETV6, FOS, MED1, PML, TERF1, MYB, PIAS1, SMAD1, SETDB1, STAT5A, BCL11A, SP1, NIPBL, REST, ATF7, ASH2L, TCF3, FOXP1, MLLT1, NFATC3, MEF2B, PPARG, FOXA2, MTA3, EBF1, CREM, NFATC1, ZNF207, ZSCAN16, GTF2B, ZBED1, MEF2C, TCF7, BCL3, YY1, RELA, TARDBP, JUNB, TCF4, SKIL, BATF, TAL1, SPIB, NR2F1, ZNF687, PKNOX1, NFKB1, TBX21, BHLHE40, AR, TAF1, ZBTB40, BRD4, AHR
- Target gene symbol (double-evidenced CRMs): JAM2,ATP5PF
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 11
- Related genes and loops