- Basic information
- CohesinDB ID: CDBP00415234
- Locus: chr21-25466894-25467363
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Data sourse: ENCSR000BLD, GSE50893, GSE120943, GSE105028
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Cell type: H1-hESC, H9-hESC, Monocytes, GM12891
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SA1,Rad21,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
35% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 92%,
"9_Het": 5%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: AR, RELA, TAF1, POU2F2, IRF4, EBF1, TRIM28, FLI1, RUNX3, NCOR1, GTF2B, BRD4, SMAD5, CTCF, USF2, SETDB1, ERG2, MITF, YY1
- Target gene symbol (double-evidenced CRMs): ATP5PF,JAM2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 1
- Related genes and loops