- Basic information
- CohesinDB ID: CDBP00415253
- Locus: chr21-25535719-25536333
-
Data sourse: GSE126634, GSE206145-NatGen2015
-
Cell type: Fibroblast, HAP1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Mau2,Rad21
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
61% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 91%,
"14_ReprPCWk": 4%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: CBX5, CBX3, TOP2A, SOX2, XBP1, GTF2B, ZNF317, SRF, MEF2C, HOXB13, ERG, MEF2A, YY1, ZNF384, JUNB, MYC, SMARCA4, RUNX3, PRDM1, GABPA, SPIB, GATA1, MITF, TRIM28, BCLAF1, KLF9, SPI1, GATA2, TRIM24, SIX2, BRD4, NCOR2, RBPJ
- Target gene symbol (double-evidenced CRMs): CYYR1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 6
- Related genes and loops