- Basic information
- CohesinDB ID: CDBP00415254
- Locus: chr21-25539425-25539987
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Data sourse: GSE206145, GSE67783, GSE86191
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Cell type: RPE, HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
61% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 49%,
"9_Het": 41%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: CBX5, POU2F2, CHD8, TBL1X, MYCN, SMC1A, RUNX1T1, POU5F1, ZFX, XBP1, WT1, ZBTB48, ZSCAN5A, TET2, TBP, ERG, YY1, RELA, ATF3, RUNX2, SP140, KLF4, TRIM28, KDM6B, EZH2, OCA2, SETDB1, CTCF, ZHX2, GSPT2, AR, TRIM24, ZBTB26, NOTCH3, AATF, SMC3, STAG1
- Target gene symbol (double-evidenced CRMs): CYYR1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 6
- Related genes and loops