- Basic information
- CohesinDB ID: CDBP00415284
- Locus: chr21-25688378-25688954
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Data sourse: GSE152721, GSE206145-NatGen2015, ENCSR230ZWH
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Cell type: Liver, Fibroblast, HAP1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: Mau2,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
61% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 75%,
"5_TxWk": 17%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, CHD8, POU5F1, TOP2A, SOX2, NME2, ID3, XBP1, GTF2B, STAT1, FOXA1, FOXF1, ERG, TFAP4, RELA, YY1, ZNF384, JUNB, ETS1, MYC, RUNX2, GATA4, NFIC, RAD21, PRDM1, ARNT, HIF1A, PBX4, GABPA, TAL1, MAX, PAX5, NR2C1, CDK8, NR3C1, CEBPB, NR2F2, ETV1, SNAI2, OCA2, GABPB1, JUN, TCF12, SP1, AR, ZBTB40, GATA2, ZNF366, FLI1, ASH2L, BRD4, FOXP1, ZIM3, FOSL2
- Target gene symbol (double-evidenced CRMs): JAM2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 9
- Number of somatic mutations (non-coding): 3
- Related genes and loops