- Basic information
- CohesinDB ID: CDBP00415307
- Locus: chr21-25808496-25808560
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Data sourse: GSE120943
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Cell type: Monocytes
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
67% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 86%,
"14_ReprPCWk": 7%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, SMARCA2, POU5F1, TOP2A, XBP1, SMAD3, FOXA1, FOXF1, ERG3, ZNF549, ERG, HOXC5, RELA, ZNF384, JUNB, RUNX2, PBX4, HIF1A, BATF3, STAT3, PBX3, TP63, FOS, CDK8, MED1, ARNTL, KLF4, CEBPB, MYB, ETV1, SCRT2, SNAI2, EZH2, CTCF, TCF12, JUN, SPI1, JUND, SCRT1, ZNF528, FOSL2
- Target gene symbol (double-evidenced CRMs): MRPL39
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 1
- Related genes and loops