- Basic information
- CohesinDB ID: CDBP00415309
- Locus: chr21-25812539-25812961
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Data sourse: GSE206145, GSE206145-NatGen2015, GSE67783, ENCSR153HNT
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Cell type: K-562, Fibroblast, HSPC, RPE
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
67% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 93%,
"14_ReprPCWk": 5%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: SMC1A, CEBPA, POU5F1, TOP2A, ZFX, ZBTB48, ZSCAN5A, SMAD3, CBX8, OGG1, SMARCA4, GRHL3, STAT3, FOS, RCOR1, CEBPG, CEBPB, ZNF750, SCRT2, ESR1, AR, RNF2, BCOR, TFAP2C, FOSL2
- Target gene symbol (double-evidenced CRMs): MRPL39
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 5
- Related genes and loops