- Basic information
- CohesinDB ID: CDBP00415364
- Locus: chr21-25982956-25984253
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Data sourse: ENCSR000BLD, ENCSR230ZWH, GSE98367, ENCSR000BLY, ENCSR000EHW, GSE101921, GSE152721, ENCSR000EHX, GSE116344, GSE94872, ENCSR917QNE
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Cell type: H1-hESC, RH4, HUVEC, HCAEC, SK-N-SH, Liver, HAP1, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 3% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.911
- Subunit: SA1,Rad21,SMC1,SA2,SMC3
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
67% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"5_TxWk": 65%,
"7_Enh": 15%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RELA, PAX8, CEBPB, CEBPA, SMARCA4, SOX2, ISL1, MAFF, JUND, ATF2, GATA3, EBF3, PHOX2B, TEAD4, MAFK, ZNF316, HAND2
- Target gene symbol (double-evidenced CRMs): MRPL39,APP
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 48
- Number of somatic mutations (non-coding): 0
- Related genes and loops