- Basic information
- CohesinDB ID: CDBP00415372
- Locus: chr21-26003541-26003718
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Data sourse: GSE25021
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Cell type: MCF-7
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: SA1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
68% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"5_TxWk": 57%,
"15_Quies": 16%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, CHD8, SMC1A, POU5F1, ZNF707, CTBP1, FOXA1, DDX5, MPHOSPH8, RELA, CREBBP, ZNF384, NEUROD1, MYC, RFX1, GR, CHD7, RAD21, ARNT, HIF1A, PRDM1, GATA3, SMARCE1, NKX3-1, RCOR1, KLF4, ZNF750, MAF, NCOA3, ZNF217, ESR1, PKNOX1, GRHL2, CTCF, RBM22, AR, DPF2, GATA2, EGLN2, POU2F3, CTBP2, MAZ, STAG1, AHR
- Target gene symbol (double-evidenced CRMs): MRPL39,APP
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000154719,
ENSG00000142192,
- Related loop:
chr21:25600000-25625000~~chr21:25975000-26000000,
chr21:25600000-25625000~~chr21:26000000-26025000,
chr21:25606914-25609560~~chr21:26000712-26002239,
chr21:25875000-25900000~~chr21:25975000-26000000,
chr21:25880643-25882866~~chr21:26000836-26002126,
chr21:25880833-25882973~~chr21:25999508-26002814,
chr21:25880878-25883186~~chr21:26000596-26002821,
chr21:25880879-25883157~~chr21:25999375-26002832,
chr21:25880888-25882763~~chr21:26000649-26002298,
chr21:25894872-25896862~~chr21:25999375-26002832,
chr21:25895093-25897256~~chr21:26000596-26002821,
chr21:25895184-25896718~~chr21:25999508-26002814,
chr21:25975000-26000000~~chr21:26100000-26125000,
chr21:25975000-26000000~~chr21:26150000-26175000,
chr21:26000000-26025000~~chr21:26325000-26350000,
chr21:26000000-26025000~~chr21:26700000-26725000,