- Basic information
- CohesinDB ID: CDBP00415391
- Locus: chr21-26060627-26060916
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Data sourse: GSE206145
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Cell type: HEK293T
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: NIPBL,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
68% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"5_TxWk": 48%,
"15_Quies": 23%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: ZNF394, GLIS1, FOXO1, NANOG, CHD8, PGR, PPARG, CEBPA, POU2F2, TOP2A, ZNF335, BRD3, NME2, XBP1, ZBTB17, WT1, FOXA1, ZNF574, ZNF580, RELA, ZNF384, ZNF35, ASCL1, ZNF341, NEUROD1, RUNX2, OSR2, CHD7, RAD21, IKZF3, MCM3, GRHL3, ZBTB44, RXRA, OTX2, PRDM1, GABPA, MZF1, NFE2, TERF2, MED1, ARNTL, NR3C1, BCL11B, ESRRA, KLF5, NCOA3, ZXDB, TRIM28, SCRT2, KMT2A, CEBPB, NR2F2, NEUROG2, PKNOX1, FEZF1, MYOD1, CTCF, BRD2, RBM22, ZNF843, SPI1, ZNF664, NR4A1, AR, BCL11A, SP1, HNF4A, GATA2, RXR, GTF3C5, HOXA9, SCRT1, PHIP, TCF3, MAZ, PRDM6, SMC3, BRCA1, PDX1
- Target gene symbol (double-evidenced CRMs): CYYR1,APP
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 8
- Number of somatic mutations (non-coding): 0
- Related genes and loops