- Basic information
- CohesinDB ID: CDBP00415404
- Locus: chr21-26093188-26093377
-
Data sourse: ENCSR000EFJ, ENCSR000BLY
-
Cell type: IMR-90, SK-N-SH
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Rad21
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
68% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"5_TxWk": 58%,
"7_Enh": 23%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: FOSL1, PGR, ZNF660, ZSCAN5C, SOX2, FOXA1, ATF3, ZFP64, ZBTB44, PRDM1, IKZF3, CHD7, ZNF189, MZF1, ZNF736, ZNF629, TRIM28, ZNF561, JUN, ZNF695, PRDM4, ZNF528, TEAD4, TFAP2C, GLIS1, NANOG, CHD8, POU5F1, CTBP1, ZSCAN21, ZBTB17, ZBTB48, ZNF317, DUX4, HOXC5, MYC, RAD21, NKX2-1, STAT3, ZNF8, ZNF85, FEZF1, ZNF664, SIX2, FLI1, MRTFB, ZNF554, NKX2-2, SMAD3, ZNF18, PRDM10, SMARCC1, ZNF549, ZNF35, ZSCAN30, OSR2, ZNF184, PBX4, DAXX, ATF2, ZEB2, FOXM1, ZNF10, FOS, SCRT2, NUP98-HOXA9, RBM22, PHIP, PRDM6, NCOR2, ZNF394, PAF1, ZNF600, ZNF692, ZSCAN16, ZNF574, JUNB, ZIC2, MAX, KLF4, SP7, TP53, PKNOX1, ZSCAN22, AR, ZNF324, ZNF366, BRD4, FOSL2
- Target gene symbol (double-evidenced CRMs): MRPL39,APP
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops