Deatailed information for cohesin site CDBP00415436
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- Basic information
- CohesinDB ID: CDBP00415436
- Locus: chr21-26179380-26179859
- Data sourse: GSE206145-NatGen2015
- Cell type: Fibroblast
- DNA Sequence of binding site: UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Mau2,Rad21
- CTCF binding site: CTCF CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
- Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True
- Compartment: 68% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 89%,
"14_ReprPCWk": 6%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2). - Co-bound Transcriptional factors: ZNF384, EGR2, ERG3, TOP2A
- Target gene symbol (double-evidenced CRMs): MRPL39,APP
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 4
- Related genes and loops
- Related gene: ENSG00000154719, ENSG00000142192,
- Related loop: chr21:24925000-24950000~~chr21:26150000-26175000, chr21:25350000-25375000~~chr21:26150000-26175000, chr21:25400000-25425000~~chr21:26150000-26175000, chr21:25575000-25600000~~chr21:26150000-26175000, chr21:25575000-25600000~~chr21:26175000-26200000, chr21:25600000-25625000~~chr21:26150000-26175000, chr21:25600000-25625000~~chr21:26175000-26200000, chr21:25625000-25650000~~chr21:26150000-26175000, chr21:25750000-25775000~~chr21:26150000-26175000, chr21:25775000-25800000~~chr21:26150000-26175000, chr21:25850000-25875000~~chr21:26175000-26200000, chr21:25875000-25900000~~chr21:26150000-26175000, chr21:25875000-25900000~~chr21:26175000-26200000, chr21:25925000-25950000~~chr21:26150000-26175000, chr21:25950000-25975000~~chr21:26150000-26175000, chr21:25975000-26000000~~chr21:26150000-26175000, chr21:26025000-26050000~~chr21:26150000-26175000, chr21:26050000-26075000~~chr21:26150000-26175000, chr21:26150000-26175000~~chr21:26325000-26350000, chr21:26150000-26175000~~chr21:26375000-26400000, chr21:26150000-26175000~~chr21:26425000-26450000, chr21:26150000-26175000~~chr21:26525000-26550000, chr21:26150000-26175000~~chr21:26550000-26575000, chr21:26150000-26175000~~chr21:26700000-26725000, chr21:26150000-26175000~~chr21:26800000-26825000, chr21:26150000-26175000~~chr21:26825000-26850000, chr21:26150000-26175000~~chr21:27500000-27525000, chr21:26175000-26200000~~chr21:26375000-26400000, chr21:26175000-26200000~~chr21:26675000-26700000, chr21:26175000-26200000~~chr21:26700000-26725000, chr21:26175000-26200000~~chr21:27500000-27525000, chr21:26175000-26200000~~chr21:28725000-28750000, chr21:26175000-26200000~~chr21:29075000-29100000, chr21:26177658-26178878~~chr21:26715348-26718310,
Tools:
- Assay
