- Basic information
- CohesinDB ID: CDBP00415456
- Locus: chr21-26236206-26236625
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Data sourse: GSE116344, GSE206145-NatGen2015
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Cell type: Fibroblast, RH4
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Rad21,SA2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
68% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 85%,
"14_ReprPCWk": 7%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PAX7, GLIS1, CHD8, CEBPA, MYCN, ZNF263, ZFX, POU4F2, XBP1, HOXB13, RELA, RUNX2, GRHL3, ARNT, MAX, ZNF143, MED1, CEBPB, EZH2, GRHL2, MYOD1, CTCF, AR, PAX3-FOXO1, HSF1, NCOR1, BRD4, SCRT1
- Target gene symbol (double-evidenced CRMs): CYYR1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 3
- Related genes and loops