- Basic information
- CohesinDB ID: CDBP00415459
- Locus: chr21-26252748-26253550
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Data sourse: GSE126634, GSE152721, GSE206145-NatGen2015
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Cell type: Fibroblast, HAP1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Rad21,SA2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
54% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 89%,
"14_ReprPCWk": 10%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): APP,CYYR1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 5
- Related genes and loops
- Related gene:
ENSG00000142192,
ENSG00000166265,
- Related loop:
chr21:15975000-16000000~~chr21:26225000-26250000,
chr21:25950000-25975000~~chr21:26250000-26275000,
chr21:26225000-26250000~~chr21:26450000-26475000,
chr21:26250000-26275000~~chr21:26350000-26375000,
chr21:26250000-26275000~~chr21:26375000-26400000,
chr21:26250000-26275000~~chr21:26525000-26550000,
chr21:26250000-26275000~~chr21:26650000-26675000,
chr21:26250000-26275000~~chr21:26675000-26700000,