- Basic information
- CohesinDB ID: CDBP00415475
- Locus: chr21-26333724-26334264
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Data sourse: ENCSR000BLD, GSE72082, GSE129526, ENCSR000BLS, GSE105028, GSE101921, ENCSR000ECE, GSE152721, GSE206145-NatGen2015, ENCSR000EHX, GSE116344, GSE97394, GSE50893
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Cell type: GM12892, H1-hESC, Fibroblast, HCT-116, RH4, Hep-G2, GM2610, GM19240, GM12878, HCAEC, GM2588, HUES64, SK-N-SH, GM19239, HAP1, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 4% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.822
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
54% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 88%,
"9_Het": 5%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: POU2F2, CHD8, SMC1A, ZFX, XBP1, ZSCAN5A, KDM1A, ERG, RELA, RUNX2, RAD21, ATF2, MAFB, TP63, RCOR1, ZNF750, MAF, ESR1, OCA2, CTCF, GATA6, HSF1, NOTCH3, MAZ, SMC3, STAG1
- Target gene symbol (double-evidenced CRMs): APP,MRPL39
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 5
- Related genes and loops