- Basic information
- CohesinDB ID: CDBP00415486
- Locus: chr21-26409616-26410188
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Data sourse: GSE76815, ENCSR000BLY, ENCSR000EHW, GSE152721, GSE206145-NatGen2015, ENCSR198ZYJ, ENCSR000EHX
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Cell type: Neurons-H1, Fibroblast, HAP1, SK-N-SH
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: Mau2,SMC3,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
54% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 82%,
"7_Enh": 9%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PAX7, POU5F1, MYCN, CHD2, SOX2, NKX2-2, SMARCC1, PRDM10, TWIST1, KDM1A, RELA, NEUROD1, GATA4, ISL1, RAD21, ARNT, CHD7, OTX2, TAL1, SMARCE1, MAFB, NKX3-1, RCOR1, HAND2, NR3C1, CEBPG, CEBPB, PITX3, EBF3, PHOX2B, TCF12, EP300, FLI1, ZIM3, TBX2, PDX1, AHR
- Target gene symbol (double-evidenced CRMs): GABPA,APP
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops