- Basic information
- CohesinDB ID: CDBP00415504
- Locus: chr21-26507039-26507391
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Data sourse: GSE206145, GSE206145-NatGen2015
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Cell type: RPE, Fibroblast
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Mau2,NIPBL,SA1,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
42% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 79%,
"7_Enh": 15%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, FOSL1, FOXA2, NKX2-2, MAFF, DUX4, FOXA1, SMARCC1, HOXC5, RELA, JUNB, ATF3, MYC, PBX4, OTX2, STAT3, MAX, MAFB, NKX3-1, FOS, CDK8, RCOR1, TAL1, TP63, MED1, ZNF736, ZNF750, CEBPB, CEBPD, NEUROG2, NFKB1, MYOD1, JUN, MAFK, AR, FLI1, BRD4, ZNF766, MRTFB, PDX1, FOSL2
- Target gene symbol (double-evidenced CRMs): CYYR1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 8
- Number of somatic mutations (non-coding): 0
- Related genes and loops