- Basic information
- CohesinDB ID: CDBP00415505
- Locus: chr21-26512271-26513860
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Data sourse: GSE206145, GSE101921, GSE206145-NatGen2015, GSE67783
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Cell type: RPE, Fibroblast, HCAEC, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 4% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: NIPBL,SA1,Rad21,SMC1,SA2,Mau2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
42% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 62%,
"5_TxWk": 18%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOSL1, NANOG, PGR, POU2F2, CHD8, POU5F1, SOX2, NME2, ZFX, XBP1, WT1, FOXA1, DDX5, HOXB13, ERG, HOXC5, RELA, NFKB2, JUNB, RUNX2, NFIC, CHD7, RAD21, ARNT, HIF1A, PBX4, DAXX, NRF1, GATA3, STAT3, MAX, ZNF143, FOS, MED1, NR3C1, CEBPB, ELF1, ETV1, PIAS1, KDM5B, TP53, NFKB1, JUN, USF1, SPI1, AR, GATA2, EGLN2, FLI1, NOTCH3, BRD4, RELB, SMC1, TEAD4
- Target gene symbol (double-evidenced CRMs): CYYR1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 30
- Number of somatic mutations (non-coding): 0
- Related genes and loops