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Basic information

CohesinDB ID: CDBP00415514

Locus: chr21-26554333-26554888

Data sourse: GSE115248, ENCSR000BLY, ENCSR000EHW, ENCSR000EHX, GSE116344

Cell type: Kelly, RH4, SK-N-SH

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.967

Subunit: SMC3,Rad21,SMC1

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 42% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 72%, "5_TxWk": 21%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: MAFG, FOXA2, MYCN, NKX2-2, CHD2, SIN3A, MAFF, FOXA1, SMARCC1, TWIST1, KDM1A, YY1, RELA, ASCL1, NFIC, SMARCA4, ISL1, RAD21, TCF4, ARNT, GATA3, SMC3, PBX3, MAFB, NKX3-1, RCOR1, HAND2, OCA2, C11orf30, PITX3, EBF3, PHOX2B, CTCF, TCF12, MAFK, EP300, GATA2, REST, MAML3, RFX5, MXI1, BRD4, NOTCH3, TEAD4, TBX2, PDX1, ZNF316

Target gene symbol (double-evidenced CRMs): CYYR1,APP

Function elements

Human SNPs: .

Number of somatic mutations (coding): 10

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000142192, ENSG00000166265,

eachgene

Deatailed information for cohesin site CDBP00415514