- Basic information
- CohesinDB ID: CDBP00415515
- Locus: chr21-26555706-26556025
-
Data sourse: ENCSR000EHX
-
Cell type: SK-N-SH
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Rad21
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
42% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 72%,
"5_TxWk": 22%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: GATA6, ASCL1, NR3C1, GATA2, MYCN, SMARCA4, CHD2, MAML3, RAD21, ISL1, PITX3, GATA3, EBF3, PHOX2B, TEAD4, TBX2, NKX3-1, EP300, PDX1, HAND2
- Target gene symbol (double-evidenced CRMs): APP,CYYR1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 4
- Number of somatic mutations (non-coding): 0
- Related genes and loops