- Basic information
- CohesinDB ID: CDBP00415518
- Locus: chr21-26565280-26565546
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Data sourse: GSE103477, GSE116344
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Cell type: MDM, RH4
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
42% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 60%,
"5_TxWk": 16%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RELA, ARNTL, RUNX1, AR, JMJD1C, FOXA2, TRIM28, KMT2A, MYB, EZH2, XBP1, GTF2B, JUN, FOXA1, PHOX2B, TP63, SPI1, HOXC5
- Target gene symbol (double-evidenced CRMs): APP,CYYR1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 6
- Number of somatic mutations (non-coding): 0
- Related genes and loops