- Basic information
- CohesinDB ID: CDBP00415521
- Locus: chr21-26587292-26589031
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Data sourse: ENCSR853VWZ, GSE138405, GSE76893, ENCSR000BLY, ENCSR000EHW, GSE101921, GSE206145-NatGen2015, GSE206145, ENCSR000EDE, ENCSR000EHX, ENCSR767DFK, GSE68388, GSE94872, ENCSR000ECS
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Cell type: RPE, HMEC, Fibroblast, Hela-Kyoto, MCF-10A, A-549, HUVEC, HCAEC, HeLa-S3, SK-N-SH, HuCC-T1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 9% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.878
- Subunit: NIPBL,SA1,Rad21,SMC1,SA2,Mau2,SMC3
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
42% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 66%,
"7_Enh": 10%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, FOSL1, PGR, SMARCA2, FOXA1, ATF3, NFIC, CHD7, SMARCE1, TEAD1, ELF1, ETV1, ESR1, OCA2, PITX3, JUN, TCF12, CTCF, EP300, RFX5, E2F1, SMC1, TEAD4, KMT2B, TFAP2C, BRD1, MYCN, CTBP1, DUX4, TBP, ERG, HOXC5, RAD21, GRHL3, RXRA, NKX2-1, STAT3, RCOR1, VDR, NR3C1, CEBPB, ESRRA, EBF3, SPI1, EHF, HDAC2, GATA2, FLI1, MXI1, MRTFB, NCOA2, SMC1A, CEBPA, EZH2phosphoT487, SIN3A, ZFX, SMAD3, TWIST1, SMARCC1, RARA, ZXDC, CREBBP, RUNX2, GATA4, PBX4, DAXX, HMGB2, PBX3, FOXM1, FOS, CDK8, MED1, CEBPD, USF1, SP1, NCOR2, STAG2, PPARG, FOXA2, CHD2, ESR2, ZBTB33, KDM1A, ZNF19, RELA, YY1, JUNB, NEUROD1, ISL1, TCF4, OTX2, GATA3, TAL1, MAX, NRIP1, HAND2, NR2F2, TCF7L2, TP53, PKNOX1, NFKB1, MYOD1, PHOX2B, ELF3, AR, MAML3, BRD4, JUND, NR1H3, TBX2, AHR, FOSL2
- Target gene symbol (double-evidenced CRMs): APP,MRPL39
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 24
- Related genes and loops