Deatailed information for cohesin site CDBP00415522
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- Basic information
- CohesinDB ID: CDBP00415522
- Locus: chr21-26593914-26594194
- Data sourse: ENCSR000EHW, ENCSR000EHX, ENCSR000BLY
- Cell type: SK-N-SH
- DNA Sequence of binding site: UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: SMC3,Rad21
- CTCF binding site: non-CTCF CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
- Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True
- Compartment: 42% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 89%,
"14_ReprPCWk": 8%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2). - Co-bound Transcriptional factors: GATA2, EP300, MYCN, CHD2, ISL1, RAD21, TCF4, PITX3, GATA3, EBF3, PHOX2B, TEAD4, TP63, TCF12, TWIST1, RCOR1, KDM1A, HAND2
- Target gene symbol (double-evidenced CRMs): MRPL39
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 3
- Related genes and loops
Tools:
- Assay
