- Basic information
- CohesinDB ID: CDBP00415526
- Locus: chr21-26625735-26626595
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Data sourse: GSE206145, GSE206145-NatGen2015, GSE86191
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Cell type: RPE, Fibroblast, HCT-116
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21,SA2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
42% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 71%,
"9_Het": 17%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, TRP47, TRIM25, POU2F2, SMC1A, FOXA2, MYCN, POU5F1, CRY1, SOX2, ZFX, RUNX1T1, XBP1, KDM4C, ZBTB48, WT1, ZSCAN5A, TBL1X, TET2, ERG, YY1, RELA, OGG1, ATF3, SP140, GRHL3, TCF4, STAT3, TP63, ZNF143, PLAG1, TEAD1, EZH2, LMO2, OCA2, CTCF, SPI1, AR, REST, PTBP1, HEXIM1, FLI1, HSF1, NOTCH3, BRD4, TCF3, MAZ, AATF, HCFC1R1, SMC3, STAG1
- Target gene symbol (double-evidenced CRMs): CYYR1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 19
- Related genes and loops