- Basic information
- CohesinDB ID: CDBP00415551
- Locus: chr21-26761360-26762618
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Data sourse: GSE116344, GSE67783, GSE83726, GSE165895
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Cell type: RH4, HSPC, HFFc6
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
41% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 86%,
"5_TxWk": 6%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXA2, MYCN, ZSCAN5D, TOP2A, ZFX, SMAD3, HOXC5, RELA, RUNX2, CDK6, GATA4, ZNF362, RAD21, PBX4, DAXX, ATF2, GATA3, FOS, MED1, NR3C1, MYOG, CREB1, ESR1, EBF3, MYOD1, JUN, AR, PAX3-FOXO1, IRF4, JUND, SMC3, NCOR2, FOSL2
- Target gene symbol (double-evidenced CRMs): ADAMTS5,LINC00113
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 10
- Related genes and loops