- Basic information
- CohesinDB ID: CDBP00415580
- Locus: chr21-26853060-26853350
-
Data sourse: GSE116344
-
Cell type: RH4
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Rad21
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
41% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 71%,
"14_ReprPCWk": 14%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: FOXO1, NFIA, TRIM25, NME2, FOXA1, RXRB, KDM3A, ZBTB44, IKZF3, MORC2, ZNF320, SFPQ, TEAD1, ZNF121, LMO2, OCA2, MED26, PITX3, ZNF561, ZNF577, ARID5B, DEK, E2F4, ZNF528, KLF3, KMT2B, GATAD2A, JARID2, NANOG, ZNF263, BRD3, TOP2A, POU5F1, ERF, ZMYND11, DUX4, STAT1, ZNF134, SAP130, ERG, ZBTB21, ZBTB8A, SMARCA4, RFX1, TOP1, UBN1, ZNF398, RCOR1, DACH1, CEBPB, CREB1, BMPR1A, GABPB1, ZHX2, ELF4, KLF17, ZNF257, GATA2, MXD3, FLI1, HCFC1, MXI1, DRAP1, RUNX1, CEBPA, NKX2-2, HDAC1, CRY1, REPIN1, ZNF654, TRIM22, SMARCC1, PRDM10, ZNF549, ZBTB2, TFDP1, ZBTB10, ATF2, FOXM1, SP2, SMARCB1, PIAS1, SMAD1, NR1H2, GSPT2, ARID2, IKZF5, ELL2, NFATC3, CHD2, SS18, NFATC1, ZSCAN16, WT1, MPHOSPH8, JUNB, NEUROD1, ZFP36, KLF4, ZFP69B, BCL11B, ZNF281, ZBTB6, MED, EGR2, ELF3, RXR, EGLN2, ZNF366, HSF1, NCOR1, ZBTB26, SCRT1, ILF3, FOSL1, ZNF660, XBP1, ZNF101, ZNF596, HNRNPK, ATF3, ZFP64, CBFB, DPF1, TP63, ZSCAN4, MITF, ZNF467, MAF, INTS11, MYOG, ELF1, RBM39, SNAI2, KLF10, ZNF624, ZNF571, FUS, CTCF, JUN, MNT, LMO1, ZBTB20, RYBP, IRF4, ZNF423, PDX1, TFAP2C, RBPJ, ZNF239, ZNF317, ZBTB17, ZBTB48, ZSCAN21, SRF, PBX1, ONECUT1, TSHZ1, ZNF2, FOXP2, KDM4A, RXRA, NKX3-1, PRDM14, VDR, NR3C1, STAT5B, KMT2A, ZBTB11, KLF8, GRHL2, EBF3, ZBTB14, SSRP1, NFIL3, CIITA, EZH2phosphoT487, AFF4, SOX13, POU4F2, ZNF770, ZNF513, ZNF18, SP3, NFIB, DAXX, ARNT, BACH1, ZNF48, PRDM9, ZEB2, PBX3, NCAPH2, ZNF10, MAFB, HMGXB4, TEAD3, ZXDB, TAF7, KLF9, TBX5, USF1, BCL11A, SP1, TFAP2A, ZNF479, ATF7, ASH2L, CTBP2, GLIS2, PRDM6, ZNF623, SMC3, STAG1, STAG2, ZNF394, TRP47, AGO1, EBF1, MAFF, ZNF580, ZKSCAN1, KLF7, KDM1A, ZNF222, KAT2B, BRG1, ZNF830, ZIC2, PCGF1, GATA3, TAL1, ZNF143, AGO2, MTA1, ZNF768, TP53, ZNF645, NFKB1, ZSCAN22, PHOX2B, BRD2, TBX21, EGR1, TFIIIC, RNF2, BRD4, JUND, SPIN1, CUX1, ZSCAN23, TBX2, ZNF468, PGR, ZNF496, SOX2, PATZ1, RING1B, LEO1, BMI1, CHD7, ATF4, ZNF189, SMARCE1, MZF1, KLF6, NFE2L2, SAP30, ESR1, TP73, ZNF524, KLF1, SOX4, E2F6, TRIM24, RFX5, GTF2F1, GLIS1, POU2F2, ZSCAN5D, KDM4C, ZBTB1, ZSCAN5A, ZMYND8, HIC1, ERG2, SP4, TBP, HOXC5, OGG1, ETS1, MYC, NKX2-1, GABPA, STAT3, INO80, EZH2, ZNF652, PHF8, SPI1, ZNF786, ZNF202, PCBP1, HDAC2, INTS13, ZNF777, ZNF76, ZNF554, NCOA2, ETV5, BCL6, SIN3A, ZBTB12, ZFP37, ERG3, CREBBP, ZNF35, ZNF384, RARA, TAF15, HMGB2, ZNF518A, SMAD4, CDK8, CSNK2A1, ZEB1, SPDEF, ZNF879, SUPT16H, NCOA1, SREBF2, ZNF22, MAFK, HNF4A, REST, ARID1A, ZHX1, HNRNPLL, ZNF543, BCOR, FOXP1, AATF, ZNF34, CXXC4, PPARG, TBL1X, HDAC6, ZNF692, GTF2B, ZNF574, YY2, RELA, TARDBP, CHAMP1, MAX, ZNF223, GFI1B, TCF7L2, KDM5B, PKNOX1, ZNF547, MYOD1, T, AR, YAP1, ZNF324, HEXIM1, AHR, FOSL2, MBD3, ZNF391, E2F7, ZSCAN5C, SUZ12, RBFOX2, ZFHX2, SFMBT1, INSM2, NFIC, ZNF362, CTCFL, PRDM1, KLF14, HDAC3, ZNF629, ZNF506, KLF5, TRIM28, ETV1, HNF1B, USF2, TCF12, EP300, BAF155, GATA6, PRDM4, GLI4, ZNF512B, E2F1, SMC1, TEAD4, FOXA3, ZNF175, EED, ZNF425, CHD8, BRD1, MYCN, CDK7, RUNX1T1, GATAD1, ARID3A, ZNF341, RAD21, GRHL3, XRCC5, NFE2, ZNF639, ARNTL, ZNF501, ZNF750, FEZF1, ZNF664, EHF, IRF1, MRTFB, ZIM3, MYF5, PTBP1, SMC1A, SIRT6, ZNF335, ZFX, NFKBIA, ZNF534, SMAD3, NMYC, TWIST1, NOTCH1, RUNX2, ZSCAN30, CDK6, OSR2, ZNF184, GATA4, GR, PBX4, NRF1, SMAD2, FOS, CHD1, SUPT5H, MED1, CEBPD, MYB, SCRT2, ZNF558, KDM6B, L3MBTL2, SETDB1, KLF16, NIPBL, ZBTB7A, PHIP, TCF3, SKI, NELFA, ZNF283, FOXA2, RBBP5, ZNF600, MIER2, ZBTB33, CDK9, HOXB13, YY1, ASXL1, ZNF610, SP140, BRCA1, HIF1A, OTX2, ZNF449, GATA1, HAND2, CEBPG, SP7, NCOA3, NR2F2, ZNF512, ZNF213, ZNF837, ZNF843, BHLHE40, TAF1, ZBTB40, ZBTB42, MYNN, NOTCH3, MAZ, ZNF24
- Target gene symbol (double-evidenced CRMs): ADAMTS5,LINC00113
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 2
- Related genes and loops
- Related gene:
ENSG00000154736,
ENSG00000225298,
- Related loop:
chr21:23400000-23425000~~chr21:26825000-26850000,
chr21:25025000-25050000~~chr21:26825000-26850000,
chr21:25375000-25400000~~chr21:26825000-26850000,
chr21:25600000-25625000~~chr21:26825000-26850000,
chr21:25625000-25650000~~chr21:26825000-26850000,
chr21:25725000-25750000~~chr21:26825000-26850000,
chr21:25875000-25900000~~chr21:26825000-26850000,
chr21:26150000-26175000~~chr21:26825000-26850000,
chr21:26700000-26725000~~chr21:26825000-26850000,
chr21:26725000-26750000~~chr21:26825000-26850000,
chr21:26825000-26850000~~chr21:26925000-26950000,
chr21:26825000-26850000~~chr21:27550000-27575000,
chr21:26825000-26850000~~chr21:27675000-27700000,
chr21:26825000-26850000~~chr21:27700000-27725000,
chr21:26825000-26850000~~chr21:28025000-28050000,
chr21:26825000-26850000~~chr21:28050000-28075000,
chr21:26825000-26850000~~chr21:28200000-28225000,
chr21:26825000-26850000~~chr21:28225000-28250000,
chr21:26825000-26850000~~chr21:28325000-28350000,
chr21:26825000-26850000~~chr21:28425000-28450000,
chr21:26825000-26850000~~chr21:28500000-28525000,
chr21:26825000-26850000~~chr21:28525000-28550000,
chr21:26825000-26850000~~chr21:28575000-28600000,
chr21:26825000-26850000~~chr21:28625000-28650000,
chr21:26825000-26850000~~chr21:28725000-28750000,
chr21:26825000-26850000~~chr21:28750000-28775000,
chr21:26825000-26850000~~chr21:28925000-28950000,
chr21:26825000-26850000~~chr21:28950000-28975000,
chr21:26825000-26850000~~chr21:30175000-30200000,
chr21:26848648-26851445~~chr21:27564056-27565671,
chr21:26848648-26851445~~chr21:27700287-27702114,
chr21:26848655-26851362~~chr21:27563683-27565992,
chr21:26848655-26851362~~chr21:27673391-27674734,
chr21:26848655-26851362~~chr21:27700015-27702372,
chr21:26848657-26851571~~chr21:27563649-27565742,
chr21:26848657-26851571~~chr21:27700129-27702131,
chr21:26848663-26851399~~chr21:27564063-27565968,
chr21:26848663-26851399~~chr21:27700279-27702131,
chr21:26848676-26851554~~chr21:27700282-27702347,
chr21:26848685-26851208~~chr21:27700325-27702096,
chr21:26848686-26851632~~chr21:27563536-27566212,
chr21:26848686-26851632~~chr21:27699551-27702135,
chr21:26848688-26851432~~chr21:27700355-27702199,
chr21:26848688-26851432~~chr21:27802305-27803923,
chr21:26848701-26852142~~chr21:27474660-27477802,
chr21:26848701-26852142~~chr21:27699511-27702311,
chr21:26848717-26851115~~chr21:27700284-27702122,
chr21:26848717-26851115~~chr21:27802133-27803841,
chr21:26848717-26851211~~chr21:27700526-27702055,
chr21:26848717-26851211~~chr21:27802381-27803695,
chr21:26848718-26851536~~chr21:27700320-27702132,
chr21:26848727-26851343~~chr21:27700565-27702018,
chr21:26848729-26851350~~chr21:27700318-27702132,
chr21:26848733-26851211~~chr21:27700246-27702059,
chr21:26848735-26851318~~chr21:27564094-27565665,
chr21:26848735-26851318~~chr21:27700350-27702114,
chr21:26848735-26852148~~chr21:27700351-27702121,
chr21:26848739-26851655~~chr21:27563988-27566020,
chr21:26848739-26851655~~chr21:27700076-27702211,
chr21:26848745-26851720~~chr21:27700358-27702051,
chr21:26848748-26851651~~chr21:27563895-27566084,
chr21:26848748-26851651~~chr21:27699952-27702148,
chr21:26848749-26851118~~chr21:27700496-27701999,
chr21:26848750-26851648~~chr21:27700517-27702048,
chr21:26848751-26851646~~chr21:27563920-27566182,
chr21:26848751-26851646~~chr21:27700023-27702186,
chr21:26848757-26851632~~chr21:27563925-27566163,
chr21:26848757-26851632~~chr21:27700291-27702152,
chr21:26848761-26852116~~chr21:27465346-27467252,
chr21:26848761-26852116~~chr21:27700300-27702127,
chr21:26848763-26851113~~chr21:27700525-27701999,
chr21:26848765-26851527~~chr21:27699929-27702131,
chr21:26848765-26851527~~chr21:27802176-27803976,
chr21:26848770-26851390~~chr21:27564032-27565789,
chr21:26848770-26851390~~chr21:27699952-27702098,
chr21:26848770-26851390~~chr21:27802290-27803924,
chr21:26848785-26851026~~chr21:27564188-27565622,
chr21:26848785-26851026~~chr21:27700507-27702020,
chr21:26848803-26851219~~chr21:27700394-27702179,
chr21:26848804-26851538~~chr21:27700287-27702107,
chr21:26848830-26851638~~chr21:27700281-27702128,
chr21:26848834-26851460~~chr21:27563907-27565665,
chr21:26848834-26851460~~chr21:27700290-27702123,
chr21:26848856-26851244~~chr21:27700305-27702116,
chr21:26848864-26851333~~chr21:27700333-27701995,
chr21:26848867-26851805~~chr21:27700506-27702101,
chr21:26848882-26851252~~chr21:27700303-27702035,
chr21:26848931-26851381~~chr21:27700288-27701996,
chr21:26848935-26851041~~chr21:27700220-27701917,
chr21:26848935-26851073~~chr21:27700474-27701901,
chr21:26848936-26851071~~chr21:27700526-27701775,
chr21:26848936-26851075~~chr21:27564009-27565590,
chr21:26848936-26851075~~chr21:27700042-27701914,
chr21:26848947-26851347~~chr21:27564022-27565633,
chr21:26848947-26851347~~chr21:27700028-27702259,
chr21:26848947-26851347~~chr21:27802087-27803810,
chr21:26848955-26851551~~chr21:27699963-27702208,
chr21:26848955-26851551~~chr21:27758404-27760678,
chr21:26848956-26852143~~chr21:27700277-27702128,
chr21:26848956-26852143~~chr21:27802108-27803785,
chr21:26848960-26851060~~chr21:27700563-27701854,
chr21:26849043-26851569~~chr21:27564132-27565614,
chr21:26849043-26851569~~chr21:27700335-27702088,
chr21:26849043-26851569~~chr21:27758641-27759952,
chr21:26849049-26852110~~chr21:27564063-27565789,
chr21:26849049-26852110~~chr21:27699913-27702170,
chr21:26849049-26852110~~chr21:27758357-27760293,
chr21:26849232-26851602~~chr21:27700517-27701777,
chr21:26849251-26851658~~chr21:27699991-27702131,
chr21:26849441-26851499~~chr21:27700289-27702138,
chr21:26849452-26851114~~chr21:27700473-27702088,
chr21:26849486-26851137~~chr21:27700482-27702087,
chr21:26849487-26851382~~chr21:27700376-27702045,
chr21:26849494-26851554~~chr21:27700337-27702131,
chr21:26849499-26851723~~chr21:27700510-27702123,
chr21:26850000-26875000~~chr21:26950000-26975000,
chr21:26850000-26875000~~chr21:27025000-27050000,
chr21:26850000-26875000~~chr21:27075000-27100000,
chr21:26850000-26875000~~chr21:27175000-27200000,
chr21:26850000-26875000~~chr21:27200000-27225000,
chr21:26850000-26875000~~chr21:27225000-27250000,
chr21:26850000-26875000~~chr21:27300000-27325000,
chr21:26850000-26875000~~chr21:27350000-27375000,
chr21:26850000-26875000~~chr21:27400000-27425000,
chr21:26850000-26875000~~chr21:27425000-27450000,
chr21:26850000-26875000~~chr21:27450000-27475000,
chr21:26850000-26875000~~chr21:27475000-27500000,
chr21:26850000-26875000~~chr21:27550000-27575000,
chr21:26850000-26875000~~chr21:27575000-27600000,
chr21:26850000-26875000~~chr21:27650000-27675000,
chr21:26850000-26875000~~chr21:27675000-27700000,
chr21:26850000-26875000~~chr21:27700000-27725000,
chr21:26850000-26875000~~chr21:28025000-28050000,
chr21:26850000-26875000~~chr21:28050000-28075000,
chr21:26850000-26875000~~chr21:28300000-28325000,
chr21:26850000-26875000~~chr21:28325000-28350000,
chr21:26850000-26875000~~chr21:28500000-28525000,
chr21:26850000-26875000~~chr21:28550000-28575000,
chr21:26850000-26875000~~chr21:28725000-28750000,
chr21:26850000-26875000~~chr21:28750000-28775000,
chr21:26850000-26875000~~chr21:28925000-28950000,