- Basic information
- CohesinDB ID: CDBP00415616
- Locus: chr21-27023138-27026303
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Data sourse: ENCSR000BLD, ENCSR000BTU, GSE97394, GSE138405, GSE111913, GSE105028, GSE206145-NatGen2015, GSE206145, ENCSR000EDE, GSE138105, GSE116344, GSE126990, ENCSR000ECS
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Cell type: RPE, H1-hESC, Fibroblast, Hela-Kyoto, RH4, SLK, Ishikawa, HeLa-S3, HUES64, RT-112, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 6% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.878
- Subunit: NIPBL,SA1,Rad21,SMC1,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
38% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 62%,
"7_Enh": 18%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NR3C1, CEBPB, NEUROD1, TEAD1, CEBPA, OTX2, NCOR2
- Target gene symbol (double-evidenced CRMs): ADAMTS1,LINC00113
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 28
- Related genes and loops