- Basic information
- CohesinDB ID: CDBP00415619
- Locus: chr21-27036692-27036976
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Data sourse: ENCSR000BLD, GSE120943, GSE105028, GSE98367
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Cell type: H1-hESC, Monocytes, Macrophage, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: Rad21,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
38% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 88%,
"7_Enh": 7%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, FOXA2, TOP2A, NME2, XBP1, FOXA1, HOXB13, ERG, NEUROD1, RUNX2, SMARCA4, RAD21, ARNT, OTX2, GABPA, NKX3-1, ARNTL, CTCF, GATA2, BRD4, PDX1
- Target gene symbol (double-evidenced CRMs): ADAMTS1,LINC00113
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 7
- Related genes and loops