- Basic information
- CohesinDB ID: CDBP00415630
- Locus: chr21-27077262-27078028
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Data sourse: GSE206145-NatGen2015, ENCSR198ZYJ, ENCSR404BPV
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Cell type: Neurons-H1, Fibroblast
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Mau2,SMC3,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
38% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 89%,
"7_Enh": 5%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, POU2F2, FOXA2, MYCN, ZNF660, HIC1, SMARCC1, ZBTB21, RELA, MYC, RUNX2, SMARCA4, FOXP2, PBX4, HIF1A, GRHL3, OTX2, GABPA, MAX, NKX3-1, CDK8, MED1, CEBPB, ETV1, OCA2, EP300, PAX3-FOXO1, REST, ZNF366, FLI1, BRD4
- Target gene symbol (double-evidenced CRMs): ADAMTS1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 12
- Related genes and loops