- Basic information
- CohesinDB ID: CDBP00415635
- Locus: chr21-27104794-27105819
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Data sourse: ENCSR000BTU, ENCSR230ZWH, GSE138405, ENCSR000BLY, GSE206145, GSE206145-NatGen2015, ENCSR000EDE, GSE68388, GSE126990, GSE108869, ENCSR000ECS
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Cell type: RPE, Hela-Kyoto, Fibroblast, HEK293T, Ishikawa, HeLa-S3, SK-N-SH, Liver, HuCC-T1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 5% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.900
- Subunit: NIPBL,SA1,Rad21,SMC1,SA2,Mau2,SMC3
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
38% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 73%,
"7_Enh": 16%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, PGR, BRD3, POU5F1, TOP2A, AFF4, SOX2, XBP1, WT1, MAFF, STAT1, FOXA1, HOXB13, SMARCC1, TBP, HOXC5, ZBTB21, RELA, ERG, NFIC, MYC, GATA4, RUNX2, RAD21, PBX4, DAXX, RXRA, GATA3, SMC3, GABPA, STAT3, MAX, PBX3, FOXM1, FOS, MED1, ARNTL, NR3C1, CEBPB, KLF4, NR2F2, TRIM28, ZNF573, KLF6, EZH2, ESR1, HNF1B, GRHL2, SETDB1, ELF3, TCF12, JUN, EP300, SP1, EHF, AR, IRF1, TAF1, GATA2, SIX2, EGR1, FLI1, ZHX1, BRD4, JUND, ZNF440, TEAD4
- Target gene symbol (double-evidenced CRMs): ADAMTS5
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 9
- Related genes and loops
- Related gene:
ENSG00000154736,
- Related loop:
chr21:26850000-26875000~~chr21:27075000-27100000,
chr21:26925000-26950000~~chr21:27100000-27125000,
chr21:27075000-27100000~~chr21:27550000-27575000,
chr21:27075000-27100000~~chr21:30300000-30325000,
chr21:27100000-27125000~~chr21:27200000-27225000,
chr21:27100000-27125000~~chr21:27225000-27250000,
chr21:27100000-27125000~~chr21:27300000-27325000,
chr21:27100000-27125000~~chr21:27350000-27375000,
chr21:27100000-27125000~~chr21:27450000-27475000,
chr21:27100000-27125000~~chr21:27475000-27500000,
chr21:27100000-27125000~~chr21:27550000-27575000,
chr21:27100000-27125000~~chr21:28325000-28350000,
chr21:27100000-27125000~~chr21:28425000-28450000,