Deatailed information for cohesin site CDBP00415657

Check detailed explainations here

  • Basic information
  • CohesinDB ID: CDBP00415657
  • Locus: chr21-27186225-27186557
  • Data sourse: GSE206145-NatGen2015, GSE67783, GSE86191
  • Cell type: Fibroblast, HCT-116, HSPC
  • DNA Sequence of binding site: UCSC hg38
  • Cohesin category
  • Peak occupancy ratio: 1% samples have this site.
  • Cell specificity (0: conserved, 1: cell type specific): 0.967
  • Subunit: SA1,Rad21,SA2
  • CTCF binding site: CTCF CTCF motif: False
  • Genomic location: Intergenic
  • 3D genome
  • TAD boundary: Boundary
  • Chromatin hubs: Hub
  • Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True
  • Compartment: 39% Hi-C samples shows Compartment A
  • Cis-regulatory elements
  • Enhancer (Fantom5): non-Enhancer
  • Super enhancer (SEdb): False
  • Chromatin annotation: "15_Quies": 98%, "9_Het": 2%,
    Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
  • Co-bound Transcriptional factors: .
  • Target gene symbol (double-evidenced CRMs): ADAMTS1
  • Function elements
  • Human SNPs: .
  • Number of somatic mutations (coding): 0
  • Number of somatic mutations (non-coding): 1
  • Related genes and loops
  • Related gene: ENSG00000154734,
  • Related loop: chr21:26850000-26875000~~chr21:27175000-27200000, chr21:27175000-27200000~~chr21:28325000-28350000,
Tools:
  • Assay

refGene

JAM2JAM2JAM2JAM2ATP5PFATP5PFATP5PFATP5PFATP5PFATP5PFATP5PFGABPAGABPAAPPAPPAPPAPPAPPAPPAPPAPPAPPAPPAPPCYYR1-AS1CYYR1-AS1CYYR1CYYR1CYYR1ADAMTS1ADAMTS5LINC00113LINC00314LINC01697LINC01697LINC01695LINC00161LINC00161
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Ruler

chr21q21.325700K25800K25900K26000K26100K26200K26300K26400K26500K26600K26700K26800K26900K27000K27100K27200K27300K27400K27500K27600K27700K27800K27900K28000K28100K28200K28300K28400K28500K28600K

Cohesin site CDBP00415657

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CDBP00415657 regulated genes

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Related cohesin loop

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