Deatailed information for cohesin site CDBP00415672
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- Basic information
- CohesinDB ID: CDBP00415672
- Locus: chr21-27240871-27241288
- Data sourse: GSE206145
- Cell type: RPE
- DNA Sequence of binding site: UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Mau2
- CTCF binding site: non-CTCF CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
- Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True
- Compartment: 39% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 92%,
"7_Enh": 4%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2). - Co-bound Transcriptional factors: BRD4, GATA3, STAT3, TCF12, EP300, BAF155
- Target gene symbol (double-evidenced CRMs): ADAMTS1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 3
- Related genes and loops
- Related gene: ENSG00000154734,
- Related loop: chr21:26850000-26875000~~chr21:27225000-27250000, chr21:27100000-27125000~~chr21:27225000-27250000, chr21:27225000-27250000~~chr21:27350000-27375000, chr21:27225000-27250000~~chr21:27450000-27475000, chr21:27225000-27250000~~chr21:27550000-27575000, chr21:27225000-27250000~~chr21:27675000-27700000, chr21:27225000-27250000~~chr21:28350000-28375000,
Tools:
- Assay
