- Basic information
- CohesinDB ID: CDBP00415713
- Locus: chr21-27407757-27408086
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Data sourse: GSE62063
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Cell type: Ramos
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: NIPBL
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
36% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 88%,
"5_TxWk": 9%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, PGR, PPARG, FOXA2, NKX2-2, CHD2, ZSCAN16, FOXA1, TWIST1, ERG, RELA, JUNB, NEUROD1, RUNX2, NFIC, GATA4, CHD7, RAD21, LHX2, ARNT, OTX2, GATA3, PRDM9, ATF2, TAL1, PBX3, MAFB, NKX3-1, FOS, RCOR1, MED1, NR3C1, NR2F2, ESR1, EBF3, JUN, TCF12, SP1, EP300, SPI1, AR, GATA2, REST, ATF7, FLI1, BRD4, JUND, TEAD4, FOSL2
- Target gene symbol (double-evidenced CRMs): ADAMTS1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops